J5_5FDU_014

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5FDU|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|2A|C|601
5FDU|1|2A|G|602
5FDU|1|2A|A|603
5FDU|1|2A|G|604
*
5FDU|1|2A|C|624
5FDU|1|2A|G|625
5FDU|1|2A|U|626
5FDU|1|2A|A|627
5FDU|1|2A|G|628
*
5FDU|1|2A|C|635
5FDU|1|2A|G|636
5FDU|1|2A|A|637
5FDU|1|2A|G|638
*
5FDU|1|2A|C|650
5FDU|1|2A|G|651
5FDU|1|2A|C|652
5FDU|1|2A|A|652|||A
5FDU|1|2A|A|652|||B
5FDU|1|2A|G|652|||C
*
5FDU|1|2A|C|652|||V
5FDU|1|2A|A|653
5FDU|1|2A|A|654
5FDU|1|2A|A|655
5FDU|1|2A|G|656

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15