J5_5FDV_014

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5FDV|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|2A|C|601
5FDV|1|2A|G|602
5FDV|1|2A|A|603
5FDV|1|2A|G|604
*
5FDV|1|2A|C|624
5FDV|1|2A|G|625
5FDV|1|2A|U|626
5FDV|1|2A|A|627
5FDV|1|2A|G|628
*
5FDV|1|2A|C|635
5FDV|1|2A|G|636
5FDV|1|2A|A|637
5FDV|1|2A|G|638
*
5FDV|1|2A|C|650
5FDV|1|2A|G|651
5FDV|1|2A|C|652
5FDV|1|2A|A|652|||A
5FDV|1|2A|A|652|||B
5FDV|1|2A|G|652|||C
*
5FDV|1|2A|C|652|||V
5FDV|1|2A|A|653
5FDV|1|2A|A|654
5FDV|1|2A|A|655
5FDV|1|2A|G|656

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15