J5_5GAD_001

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUC*GAGG

Length

24 nucleotides

Bulged bases

5GAD|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAD|1|A|C|47
5GAD|1|A|G|48
5GAD|1|A|A|49
5GAD|1|A|U|50
5GAD|1|A|G|51
5GAD|1|A|A|52
5GAD|1|A|A|53
5GAD|1|A|G|54
*
5GAD|1|A|C|116
5GAD|1|A|G|117
5GAD|1|A|A|118
5GAD|1|A|A|119
5GAD|1|A|U|120
5GAD|1|A|G|121
*
5GAD|1|A|C|130
5GAD|1|A|A|131
*
5GAD|1|A|U|148
5GAD|1|A|A|149
5GAD|1|A|U|150
5GAD|1|A|C|151
*
5GAD|1|A|G|175
5GAD|1|A|A|176
5GAD|1|A|G|177
5GAD|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34