J5_5GAF_005
3D structure
- PDB id
- 5GAF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 5GAF|1|A|A|2062, 5GAF|1|A|A|2448, 5GAF|1|A|U|2449, 5GAF|1|A|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAF|1|A|G|2057
5GAF|1|A|A|2058
5GAF|1|A|A|2059
5GAF|1|A|A|2060
5GAF|1|A|G|2061
5GAF|1|A|A|2062
5GAF|1|A|C|2063
5GAF|1|A|C|2064
*
5GAF|1|A|G|2446
5GAF|1|A|G|2447
5GAF|1|A|A|2448
5GAF|1|A|U|2449
5GAF|1|A|A|2450
5GAF|1|A|A|2451
5GAF|1|A|C|2452
5GAF|1|A|A|2453
*
5GAF|1|A|U|2500
5GAF|1|A|C|2501
5GAF|1|A|G|2502
5GAF|1|A|A|2503
5GAF|1|A|U|2504
5GAF|1|A|G|2505
5GAF|1|A|U|2506
5GAF|1|A|C|2507
*
5GAF|1|A|G|2582
5GAF|1|A|G|2583
5GAF|1|A|U|2584
5GAF|1|A|U|2585
5GAF|1|A|U|2586
5GAF|1|A|A|2587
5GAF|1|A|G|2588
*
5GAF|1|A|C|2606
5GAF|1|A|G|2607
5GAF|1|A|G|2608
5GAF|1|A|U|2609
5GAF|1|A|C|2610
5GAF|1|A|C|2611
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- tRNA CCAend
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: