J5_5GAH_007

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5GAH|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5GAH_007 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.081

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5GAH|1|A|C|47
5GAH|1|A|G|48
5GAH|1|A|A|49
5GAH|1|A|U|50
5GAH|1|A|G|51
5GAH|1|A|A|52
5GAH|1|A|A|53
5GAH|1|A|G|54
*
5GAH|1|A|C|116
5GAH|1|A|G|117
5GAH|1|A|A|118
5GAH|1|A|A|119
5GAH|1|A|U|120
5GAH|1|A|G|121
*
5GAH|1|A|C|130
5GAH|1|A|A|131
*
5GAH|1|A|U|148
5GAH|1|A|A|149
5GAH|1|A|U|150
*
5GAH|1|A|A|176
5GAH|1|A|G|177
5GAH|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34