J5_5H4P_005
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 5H4P|1|1|A|2817, 5H4P|1|1|U|2818, 5H4P|1|1|U|2873, 5H4P|1|1|G|2874, 5H4P|1|1|U|2978, 5H4P|1|1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5H4P|1|1|A|2399
5H4P|1|1|G|2400
5H4P|1|1|A|2401
5H4P|1|1|A|2402
5H4P|1|1|G|2403
5H4P|1|1|A|2404
5H4P|1|1|C|2405
5H4P|1|1|C|2406
*
5H4P|1|1|G|2815
5H4P|1|1|G|2816
5H4P|1|1|A|2817
5H4P|1|1|U|2818
5H4P|1|1|A|2819
5H4P|1|1|A|2820
5H4P|1|1|C|2821
5H4P|1|1|U|2822
5H4P|1|1|G|2823
*
5H4P|1|1|C|2867
5H4P|1|1|U|2868
5H4P|1|1|U|2869
5H4P|1|1|C|2870
5H4P|1|1|G|2871
5H4P|1|1|A|2872
5H4P|1|1|U|2873
5H4P|1|1|G|2874
5H4P|1|1|U|2875
5H4P|1|1|C|2876
*
5H4P|1|1|G|2951
5H4P|1|1|G|2952
5H4P|1|1|U|2953
5H4P|1|1|U|2954
5H4P|1|1|U|2955
5H4P|1|1|A|2956
5H4P|1|1|G|2957
*
5H4P|1|1|U|2975
5H4P|1|1|A|2976
5H4P|1|1|G|2977
5H4P|1|1|U|2978
5H4P|1|1|U|2979
5H4P|1|1|U|2980
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain w
- 60S ribosomal export protein NMD3
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
Coloring options: