J5_5H4P_007
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GCGAG*CGUAA*UGAACGUAG*CGA*UAAGAGC
- Length
- 29 nucleotides
- Bulged bases
- 5H4P|1|1|U|719, 5H4P|1|1|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5H4P|1|1|G|674
5H4P|1|1|C|675
5H4P|1|1|G|676
5H4P|1|1|A|677
5H4P|1|1|G|678
*
5H4P|1|1|C|702
5H4P|1|1|G|703
5H4P|1|1|U|704
5H4P|1|1|A|705
5H4P|1|1|A|706
*
5H4P|1|1|U|713
5H4P|1|1|G|714
5H4P|1|1|A|715
5H4P|1|1|A|716
5H4P|1|1|C|717
5H4P|1|1|G|718
5H4P|1|1|U|719
5H4P|1|1|A|720
5H4P|1|1|G|721
*
5H4P|1|1|C|749
5H4P|1|1|G|750
5H4P|1|1|A|751
*
5H4P|1|1|U|782
5H4P|1|1|A|783
5H4P|1|1|A|784
5H4P|1|1|G|785
5H4P|1|1|A|786
5H4P|1|1|G|787
5H4P|1|1|C|788
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36-A
Coloring options: