J5_5H5U_008

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5H5U_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.058

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5H5U|1|h|C|36
5H5U|1|h|U|37
5H5U|1|h|G|38
5H5U|1|h|G|39
*
5H5U|1|h|C|403
5H5U|1|h|G|404
5H5U|1|h|U|405
5H5U|1|h|G|406
*
5H5U|1|h|C|436
5H5U|1|h|U|437
5H5U|1|h|U|438
5H5U|1|h|U|439
5H5U|1|h|C|440
5H5U|1|h|A|441
5H5U|1|h|G|442
*
5H5U|1|h|C|492
5H5U|1|h|A|493
5H5U|1|h|G|494
5H5U|1|h|A|495
5H5U|1|h|A|496
5H5U|1|h|G|497
5H5U|1|h|A|498
5H5U|1|h|A|499
5H5U|1|h|G|500
*
5H5U|1|h|C|545
5H5U|1|h|A|546
5H5U|1|h|A|547
5H5U|1|h|G|548

Current chains

Chain h

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S4

Chain s

30S ribosomal protein S12