J5_5HAU_005

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

5HAU|1|1A|G|1788, 5HAU|1|1A|G|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5HAU_005 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0564

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5HAU|1|1A|G|1720
5HAU|1|1A|C|1721
5HAU|1|1A|A|1722
5HAU|1|1A|A|1723
5HAU|1|1A|G|1724
5HAU|1|1A|U|1725
5HAU|1|1A|U|1726
5HAU|1|1A|G|1727
5HAU|1|1A|G|1728
*
5HAU|1|1A|U|1752
5HAU|1|1A|G|1753
*
5HAU|1|1A|C|1781
5HAU|1|1A|C|1782
*
5HAU|1|1A|G|1786
5HAU|1|1A|U|1787
5HAU|1|1A|G|1788
5HAU|1|1A|A|1789
5HAU|1|1A|A|1790
5HAU|1|1A|C|1791
5HAU|1|1A|A|1792
5HAU|1|1A|G|1793
5HAU|1|1A|G|1794
*
5HAU|1|1A|C|2009
5HAU|1|1A|G|2010
5HAU|1|1A|C|2011

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1M

50S ribosomal protein L14

Chain 1R

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA