J5_5HCP_014

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5HCP|1|2A|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2A|C|623
5HCP|1|2A|G|624
5HCP|1|2A|A|625
5HCP|1|2A|G|626
*
5HCP|1|2A|C|648
5HCP|1|2A|G|649
5HCP|1|2A|U|650
5HCP|1|2A|A|651
5HCP|1|2A|G|652
*
5HCP|1|2A|C|659
5HCP|1|2A|G|660
5HCP|1|2A|A|661
5HCP|1|2A|G|662
*
5HCP|1|2A|C|674
5HCP|1|2A|G|675
5HCP|1|2A|C|676
5HCP|1|2A|A|677
5HCP|1|2A|A|678
5HCP|1|2A|G|679
*
5HCP|1|2A|C|698
5HCP|1|2A|A|699
5HCP|1|2A|A|700
5HCP|1|2A|A|701
5HCP|1|2A|G|702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15