J5_5HCQ_014

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5HCQ|1|2A|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|2A|C|623
5HCQ|1|2A|G|624
5HCQ|1|2A|A|625
5HCQ|1|2A|G|626
*
5HCQ|1|2A|C|648
5HCQ|1|2A|G|649
5HCQ|1|2A|U|650
5HCQ|1|2A|A|651
5HCQ|1|2A|G|652
*
5HCQ|1|2A|C|659
5HCQ|1|2A|G|660
5HCQ|1|2A|A|661
5HCQ|1|2A|G|662
*
5HCQ|1|2A|C|674
5HCQ|1|2A|G|675
5HCQ|1|2A|C|676
5HCQ|1|2A|A|677
5HCQ|1|2A|A|678
5HCQ|1|2A|G|679
*
5HCQ|1|2A|C|698
5HCQ|1|2A|A|699
5HCQ|1|2A|A|700
5HCQ|1|2A|A|701
5HCQ|1|2A|G|702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15