J5_5HD1_006
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5HD1|1|1A|A|2083, 5HD1|1|1A|A|2459, 5HD1|1|1A|U|2460, 5HD1|1|1A|U|2596, 5HD1|1|1A|U|2620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HD1|1|1A|A|2078
5HD1|1|1A|A|2079
5HD1|1|1A|A|2080
5HD1|1|1A|A|2081
5HD1|1|1A|G|2082
5HD1|1|1A|A|2083
5HD1|1|1A|C|2084
5HD1|1|1A|C|2085
*
5HD1|1|1A|G|2457
5HD1|1|1A|G|2458
5HD1|1|1A|A|2459
5HD1|1|1A|U|2460
5HD1|1|1A|A|2461
5HD1|1|1A|A|2462
5HD1|1|1A|C|2463
5HD1|1|1A|A|2464
*
5HD1|1|1A|U|2511
5HD1|1|1A|C|2512
5HD1|1|1A|G|2513
5HD1|1|1A|A|2514
5HD1|1|1A|U|2515
5HD1|1|1A|G|2516
5HD1|1|1A|U|2517
5HD1|1|1A|C|2518
*
5HD1|1|1A|G|2593
5HD1|1|1A|G|2594
5HD1|1|1A|U|2595
5HD1|1|1A|U|2596
5HD1|1|1A|C|2597
5HD1|1|1A|A|2598
5HD1|1|1A|G|2599
*
5HD1|1|1A|C|2617
5HD1|1|1A|G|2618
5HD1|1|1A|G|2619
5HD1|1|1A|U|2620
5HD1|1|1A|C|2621
5HD1|1|1A|U|2622
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1D
- 50S ribosomal protein L2
- Chain 1E
- 50S ribosomal protein L3
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1W
- 50S ribosomal protein L22
- Chain 1x
- Transfer RNA; tRNA
- Chain 1z
- Pyrrhocoricin
Coloring options: