J5_5HD1_014

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5HD1|1|2A|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HD1|1|2A|C|623
5HD1|1|2A|G|624
5HD1|1|2A|A|625
5HD1|1|2A|G|626
*
5HD1|1|2A|C|648
5HD1|1|2A|G|649
5HD1|1|2A|U|650
5HD1|1|2A|A|651
5HD1|1|2A|G|652
*
5HD1|1|2A|C|659
5HD1|1|2A|G|660
5HD1|1|2A|A|661
5HD1|1|2A|G|662
*
5HD1|1|2A|C|674
5HD1|1|2A|G|675
5HD1|1|2A|C|676
5HD1|1|2A|A|677
5HD1|1|2A|A|678
5HD1|1|2A|G|679
*
5HD1|1|2A|C|698
5HD1|1|2A|A|699
5HD1|1|2A|A|700
5HD1|1|2A|A|701
5HD1|1|2A|G|702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15