J5_5HKV_004
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5HKV|1|X|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5HKV_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0517
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5HKV|1|X|C|627
5HKV|1|X|G|628
5HKV|1|X|A|629
5HKV|1|X|G|630
5HKV|1|X|U|631
5HKV|1|X|U|632
*
5HKV|1|X|A|713
5HKV|1|X|G|714
5HKV|1|X|A|715
5HKV|1|X|C|716
*
5HKV|1|X|G|854
5HKV|1|X|U|855
5HKV|1|X|U|856
5HKV|1|X|C|857
*
5HKV|1|X|G|1234
5HKV|1|X|C|1235
*
5HKV|1|X|G|1288
5HKV|1|X|A|1289
5HKV|1|X|G|1290
5HKV|1|X|A|1291
5HKV|1|X|A|1292
5HKV|1|X|U|1293
5HKV|1|X|G|1294
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
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