J5_5HKV_006

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

5HKV|1|X|A|2089, 5HKV|1|X|A|2475, 5HKV|1|X|U|2476, 5HKV|1|X|U|2612, 5HKV|1|X|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|G|2084
5HKV|1|X|A|2085
5HKV|1|X|A|2086
5HKV|1|X|A|2087
5HKV|1|X|G|2088
5HKV|1|X|A|2089
5HKV|1|X|C|2090
5HKV|1|X|C|2091
*
5HKV|1|X|G|2473
5HKV|1|X|G|2474
5HKV|1|X|A|2475
5HKV|1|X|U|2476
5HKV|1|X|A|2477
5HKV|1|X|A|2478
5HKV|1|X|C|2479
5HKV|1|X|A|2480
*
5HKV|1|X|U|2527
5HKV|1|X|C|2528
5HKV|1|X|G|2529
5HKV|1|X|A|2530
5HKV|1|X|U|2531
5HKV|1|X|G|2532
5HKV|1|X|U|2533
5HKV|1|X|C|2534
*
5HKV|1|X|G|2609
5HKV|1|X|G|2610
5HKV|1|X|U|2611
5HKV|1|X|U|2612
5HKV|1|X|C|2613
5HKV|1|X|A|2614
5HKV|1|X|G|2615
*
5HKV|1|X|C|2633
5HKV|1|X|G|2634
5HKV|1|X|G|2635
5HKV|1|X|U|2636
5HKV|1|X|C|2637
5HKV|1|X|C|2638

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32