J5_5HKV_008

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5HKV|1|X|U|301, 5HKV|1|X|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|C|271
5HKV|1|X|C|272
5HKV|1|X|A|273
5HKV|1|X|A|274
5HKV|1|X|A|275
5HKV|1|X|C|276
*
5HKV|1|X|G|295
5HKV|1|X|G|296
5HKV|1|X|G|297
5HKV|1|X|U|298
5HKV|1|X|U|299
5HKV|1|X|G|300
5HKV|1|X|U|301
5HKV|1|X|A|302
*
5HKV|1|X|U|415
5HKV|1|X|G|416
5HKV|1|X|A|417
5HKV|1|X|G|418
5HKV|1|X|U|419
5HKV|1|X|A|420
5HKV|1|X|C|421
*
5HKV|1|X|G|445
5HKV|1|X|G|446
5HKV|1|X|A|447
5HKV|1|X|A|448
5HKV|1|X|U|449
5HKV|1|X|C|450
5HKV|1|X|U|451
5HKV|1|X|G|452
*
5HKV|1|X|U|467
5HKV|1|X|A|468
5HKV|1|X|A|469
5HKV|1|X|G|470

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28