J5_5HL7_006

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

5HL7|1|X|A|2089, 5HL7|1|X|A|2475, 5HL7|1|X|U|2476, 5HL7|1|X|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|G|2084
5HL7|1|X|A|2085
5HL7|1|X|A|2086
5HL7|1|X|A|2087
5HL7|1|X|G|2088
5HL7|1|X|A|2089
5HL7|1|X|C|2090
5HL7|1|X|C|2091
*
5HL7|1|X|G|2473
5HL7|1|X|G|2474
5HL7|1|X|A|2475
5HL7|1|X|U|2476
5HL7|1|X|A|2477
5HL7|1|X|A|2478
5HL7|1|X|C|2479
5HL7|1|X|A|2480
*
5HL7|1|X|U|2527
5HL7|1|X|C|2528
5HL7|1|X|G|2529
5HL7|1|X|A|2530
5HL7|1|X|U|2531
5HL7|1|X|G|2532
5HL7|1|X|U|2533
5HL7|1|X|C|2534
*
5HL7|1|X|G|2609
5HL7|1|X|G|2610
5HL7|1|X|U|2611
5HL7|1|X|U|2612
5HL7|1|X|C|2613
5HL7|1|X|A|2614
5HL7|1|X|G|2615
*
5HL7|1|X|C|2633
5HL7|1|X|G|2634
5HL7|1|X|G|2635
5HL7|1|X|U|2636
5HL7|1|X|C|2637
5HL7|1|X|C|2638

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32