J5_5HL7_008

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5HL7|1|X|U|301, 5HL7|1|X|A|417, 5HL7|1|X|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|C|271
5HL7|1|X|C|272
5HL7|1|X|A|273
5HL7|1|X|A|274
5HL7|1|X|A|275
5HL7|1|X|C|276
*
5HL7|1|X|G|295
5HL7|1|X|G|296
5HL7|1|X|G|297
5HL7|1|X|U|298
5HL7|1|X|U|299
5HL7|1|X|G|300
5HL7|1|X|U|301
5HL7|1|X|A|302
*
5HL7|1|X|U|415
5HL7|1|X|G|416
5HL7|1|X|A|417
5HL7|1|X|G|418
5HL7|1|X|U|419
5HL7|1|X|A|420
5HL7|1|X|C|421
*
5HL7|1|X|G|445
5HL7|1|X|G|446
5HL7|1|X|A|447
5HL7|1|X|A|448
5HL7|1|X|U|449
5HL7|1|X|C|450
5HL7|1|X|U|451
5HL7|1|X|G|452
*
5HL7|1|X|U|467
5HL7|1|X|A|468
5HL7|1|X|A|469
5HL7|1|X|G|470

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28