J5_5I4L_010

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

5I4L|1|2|U|128, 5I4L|1|2|U|132, 5I4L|1|2|C|136, 5I4L|1|2|U|137, 5I4L|1|2|A|140, 5I4L|1|2|U|141, 5I4L|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|2|A|124
5I4L|1|2|U|125
5I4L|1|2|A|126
5I4L|1|2|G|127
5I4L|1|2|U|128
5I4L|1|2|U|129
5I4L|1|2|C|130
5I4L|1|2|C|131
5I4L|1|2|U|132
5I4L|1|2|U|133
5I4L|1|2|U|134
5I4L|1|2|A|135
5I4L|1|2|C|136
5I4L|1|2|U|137
5I4L|1|2|A|138
5I4L|1|2|C|139
5I4L|1|2|A|140
5I4L|1|2|U|141
5I4L|1|2|G|142
5I4L|1|2|G|143
*
5I4L|1|2|C|172
5I4L|1|2|A|173
5I4L|1|2|U|174
5I4L|1|2|G|175
5I4L|1|2|C|176
5I4L|1|2|U|177
5I4L|1|2|U|178
5I4L|1|2|A|179
5I4L|1|2|A|180
5I4L|1|2|A|181
5I4L|1|2|A|182
*
5I4L|1|2|U|203
5I4L|1|2|G|204
*
5I4L|1|2|C|263
5I4L|1|2|G|264
5I4L|1|2|A|265
5I4L|1|2|A|266
5I4L|1|2|U|267
*
5I4L|1|2|A|288
5I4L|1|2|U|289
5I4L|1|2|G|290
5I4L|1|2|G|291
5I4L|1|2|U|292
5I4L|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A