J5_5I4L_018

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5I4L|1|6|A|541, 5I4L|1|6|C|543, 5I4L|1|6|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|6|C|31
5I4L|1|6|U|32
5I4L|1|6|U|33
5I4L|1|6|G|34
5I4L|1|6|U|35
*
5I4L|1|6|A|473
5I4L|1|6|A|474
5I4L|1|6|A|475
5I4L|1|6|U|476
5I4L|1|6|A|477
5I4L|1|6|A|478
5I4L|1|6|C|479
*
5I4L|1|6|G|509
5I4L|1|6|G|510
5I4L|1|6|A|511
5I4L|1|6|A|512
5I4L|1|6|U|513
5I4L|1|6|G|514
5I4L|1|6|A|515
5I4L|1|6|G|516
*
5I4L|1|6|C|536
5I4L|1|6|G|537
5I4L|1|6|A|538
5I4L|1|6|G|539
5I4L|1|6|G|540
5I4L|1|6|A|541
5I4L|1|6|A|542
5I4L|1|6|C|543
5I4L|1|6|A|544
5I4L|1|6|A|545
5I4L|1|6|U|546
*
5I4L|1|6|A|592
5I4L|1|6|U|593
5I4L|1|6|A|594
5I4L|1|6|G|595

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A