J5_5I4L_020

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGAC*GUAAUGAU

Length

37 nucleotides

Bulged bases

5I4L|1|6|U|639, 5I4L|1|6|U|694, 5I4L|1|6|C|696, 5I4L|1|6|U|742, 5I4L|1|6|U|813, 5I4L|1|6|G|815, 5I4L|1|6|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|6|A|636
5I4L|1|6|C|637
5I4L|1|6|U|638
5I4L|1|6|U|639
5I4L|1|6|U|640
5I4L|1|6|G|641
*
5I4L|1|6|U|693
5I4L|1|6|U|694
5I4L|1|6|U|695
5I4L|1|6|C|696
5I4L|1|6|C|697
5I4L|1|6|U|698
*
5I4L|1|6|A|740
5I4L|1|6|C|741
5I4L|1|6|U|742
5I4L|1|6|U|743
5I4L|1|6|U|744
*
5I4L|1|6|A|807
5I4L|1|6|U|808
5I4L|1|6|A|809
5I4L|1|6|G|810
5I4L|1|6|A|811
5I4L|1|6|A|812
5I4L|1|6|U|813
5I4L|1|6|A|814
5I4L|1|6|G|815
5I4L|1|6|G|816
5I4L|1|6|A|817
5I4L|1|6|C|818
*
5I4L|1|6|G|853
5I4L|1|6|U|854
5I4L|1|6|A|855
5I4L|1|6|A|856
5I4L|1|6|U|857
5I4L|1|6|G|858
5I4L|1|6|A|859
5I4L|1|6|U|860

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain m9

60S ribosomal protein L19-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A