J5_5I4L_022
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 5I4L|1|6|U|639, 5I4L|1|6|U|694, 5I4L|1|6|C|696, 5I4L|1|6|U|742, 5I4L|1|6|U|813, 5I4L|1|6|G|815, 5I4L|1|6|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5I4L|1|6|A|636
5I4L|1|6|C|637
5I4L|1|6|U|638
5I4L|1|6|U|639
5I4L|1|6|U|640
5I4L|1|6|G|641
*
5I4L|1|6|U|693
5I4L|1|6|U|694
5I4L|1|6|U|695
5I4L|1|6|C|696
5I4L|1|6|C|697
5I4L|1|6|U|698
*
5I4L|1|6|A|740
5I4L|1|6|C|741
5I4L|1|6|U|742
5I4L|1|6|U|743
5I4L|1|6|U|744
*
5I4L|1|6|A|807
5I4L|1|6|U|808
5I4L|1|6|A|809
5I4L|1|6|G|810
5I4L|1|6|A|811
5I4L|1|6|A|812
5I4L|1|6|U|813
5I4L|1|6|A|814
5I4L|1|6|G|815
5I4L|1|6|G|816
5I4L|1|6|A|817
*
5I4L|1|6|U|854
5I4L|1|6|A|855
5I4L|1|6|A|856
5I4L|1|6|U|857
5I4L|1|6|G|858
5I4L|1|6|A|859
5I4L|1|6|U|860
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain d2
- 40S ribosomal protein S22-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s7
- 40S ribosomal protein S7-A
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