J5_5IB7_004

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5IB7|1|14|U|271|||C, 5IB7|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|14|C|268
5IB7|1|14|U|269
5IB7|1|14|A|270
5IB7|1|14|A|270|||A
5IB7|1|14|A|270|||B
5IB7|1|14|C|270|||C
*
5IB7|1|14|G|270|||W
5IB7|1|14|G|270|||X
5IB7|1|14|G|270|||Y
5IB7|1|14|U|270|||Z
5IB7|1|14|C|271|||A
5IB7|1|14|G|271|||B
5IB7|1|14|U|271|||C
5IB7|1|14|G|271
*
5IB7|1|14|C|366
5IB7|1|14|G|370
5IB7|1|14|A|371
5IB7|1|14|G|372
5IB7|1|14|U|373
5IB7|1|14|A|374
5IB7|1|14|C|375
*
5IB7|1|14|G|399
5IB7|1|14|G|400
5IB7|1|14|A|401
5IB7|1|14|A|402
5IB7|1|14|U|403
5IB7|1|14|C|404
5IB7|1|14|U|405
5IB7|1|14|G|406
*
5IB7|1|14|U|421
5IB7|1|14|A|422
5IB7|1|14|A|423
5IB7|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28