3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
5IB7|1|14|G|1758, 5IB7|1|14|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5IB7_007 not in the Motif Atlas
Homologous match to J5_9DFE_005
Geometric discrepancy: 0.1048
The information below is about J5_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5IB7|1|14|G|1674
5IB7|1|14|C|1675
5IB7|1|14|A|1676
5IB7|1|14|A|1677
5IB7|1|14|G|1678
5IB7|1|14|U|1679
5IB7|1|14|U|1680
5IB7|1|14|G|1681
5IB7|1|14|G|1682
*
5IB7|1|14|U|1706
5IB7|1|14|G|1707
*
5IB7|1|14|C|1751
5IB7|1|14|C|1752
*
5IB7|1|14|G|1756
5IB7|1|14|U|1757
5IB7|1|14|G|1758
5IB7|1|14|A|1759
5IB7|1|14|A|1760
5IB7|1|14|C|1761
5IB7|1|14|A|1762
5IB7|1|14|G|1763
5IB7|1|14|G|1764
*
5IB7|1|14|C|1988
5IB7|1|14|G|1989
5IB7|1|14|C|1990

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 1G
Small subunit ribosomal RNA; SSU rRNA
Chain 25
50S ribosomal protein L14
Chain 29
50S ribosomal protein L3
Chain 75
50S ribosomal protein L19

Coloring options:


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