J5_5IB7_008
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5IB7|1|14|A|2062, 5IB7|1|14|A|2448, 5IB7|1|14|U|2449, 5IB7|1|14|U|2506, 5IB7|1|14|U|2585, 5IB7|1|14|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IB7|1|14|A|2057
5IB7|1|14|A|2058
5IB7|1|14|A|2059
5IB7|1|14|A|2060
5IB7|1|14|G|2061
5IB7|1|14|A|2062
5IB7|1|14|C|2063
5IB7|1|14|C|2064
*
5IB7|1|14|G|2446
5IB7|1|14|G|2447
5IB7|1|14|A|2448
5IB7|1|14|U|2449
5IB7|1|14|A|2450
5IB7|1|14|A|2451
5IB7|1|14|C|2452
5IB7|1|14|A|2453
*
5IB7|1|14|U|2500
5IB7|1|14|C|2501
5IB7|1|14|G|2502
5IB7|1|14|A|2503
5IB7|1|14|U|2504
5IB7|1|14|G|2505
5IB7|1|14|U|2506
5IB7|1|14|C|2507
*
5IB7|1|14|G|2582
5IB7|1|14|G|2583
5IB7|1|14|U|2584
5IB7|1|14|U|2585
5IB7|1|14|C|2586
5IB7|1|14|A|2587
5IB7|1|14|G|2588
*
5IB7|1|14|C|2606
5IB7|1|14|G|2607
5IB7|1|14|G|2608
5IB7|1|14|U|2609
5IB7|1|14|C|2610
5IB7|1|14|U|2611
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 29
- 50S ribosomal protein L3
- Chain 2L
- Transfer RNA; tRNA
- Chain 35
- 50S ribosomal protein L15
- Chain 39
- 50S ribosomal protein L4
- Chain 45
- 50S ribosomal protein L16
- Chain A5
- 50S ribosomal protein L22
- Chain J5
- 50S ribosomal protein L32
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