J5_5IB7_016

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAACG*CGAAAAG

Length

28 nucleotides

Bulged bases

5IB7|1|1H|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|1H|C|601
5IB7|1|1H|G|602
5IB7|1|1H|A|603
5IB7|1|1H|G|604
*
5IB7|1|1H|C|624
5IB7|1|1H|G|625
5IB7|1|1H|U|626
5IB7|1|1H|A|627
5IB7|1|1H|G|628
*
5IB7|1|1H|C|635
5IB7|1|1H|G|636
5IB7|1|1H|A|637
5IB7|1|1H|G|638
*
5IB7|1|1H|C|650
5IB7|1|1H|G|651
5IB7|1|1H|C|652
5IB7|1|1H|A|653
5IB7|1|1H|A|654
5IB7|1|1H|A|654|||A
5IB7|1|1H|C|654|||B
5IB7|1|1H|G|654|||C
*
5IB7|1|1H|C|654|||R
5IB7|1|1H|G|654|||S
5IB7|1|1H|A|654|||T
5IB7|1|1H|A|654|||U
5IB7|1|1H|A|654|||V
5IB7|1|1H|A|655
5IB7|1|1H|G|656

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35