J5_5IB8_013

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5IB8|1|1H|U|271|||C, 5IB8|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|1H|C|268
5IB8|1|1H|U|269
5IB8|1|1H|A|270
5IB8|1|1H|A|270|||A
5IB8|1|1H|A|270|||B
5IB8|1|1H|C|270|||C
*
5IB8|1|1H|G|270|||W
5IB8|1|1H|G|270|||X
5IB8|1|1H|G|270|||Y
5IB8|1|1H|U|270|||Z
5IB8|1|1H|C|271|||A
5IB8|1|1H|G|271|||B
5IB8|1|1H|U|271|||C
5IB8|1|1H|G|271
*
5IB8|1|1H|C|366
5IB8|1|1H|G|370
5IB8|1|1H|A|371
5IB8|1|1H|G|372
5IB8|1|1H|U|373
5IB8|1|1H|A|374
5IB8|1|1H|C|375
*
5IB8|1|1H|G|399
5IB8|1|1H|G|400
5IB8|1|1H|A|401
5IB8|1|1H|A|402
5IB8|1|1H|U|403
5IB8|1|1H|C|404
5IB8|1|1H|U|405
5IB8|1|1H|G|406
*
5IB8|1|1H|U|421
5IB8|1|1H|A|422
5IB8|1|1H|A|423
5IB8|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28