J5_5IBB_016

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAAC*GAAAAG

Length

26 nucleotides

Bulged bases

5IBB|1|1H|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IBB|1|1H|C|601
5IBB|1|1H|G|602
5IBB|1|1H|A|603
5IBB|1|1H|G|604
*
5IBB|1|1H|C|624
5IBB|1|1H|G|625
5IBB|1|1H|U|626
5IBB|1|1H|A|627
5IBB|1|1H|G|628
*
5IBB|1|1H|C|635
5IBB|1|1H|G|636
5IBB|1|1H|A|637
5IBB|1|1H|G|638
*
5IBB|1|1H|C|650
5IBB|1|1H|G|651
5IBB|1|1H|C|652
5IBB|1|1H|A|653
5IBB|1|1H|A|654
5IBB|1|1H|A|654|||A
5IBB|1|1H|C|654|||B
*
5IBB|1|1H|G|654|||S
5IBB|1|1H|A|654|||T
5IBB|1|1H|A|654|||U
5IBB|1|1H|A|654|||V
5IBB|1|1H|A|655
5IBB|1|1H|G|656

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35