J5_5IMQ_001

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IMQ_001 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.2351

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|A|C|36
5IMQ|1|A|U|37
5IMQ|1|A|G|38
5IMQ|1|A|G|39
*
5IMQ|1|A|C|403
5IMQ|1|A|U|404
5IMQ|1|A|U|405
5IMQ|1|A|G|406
*
5IMQ|1|A|C|436
5IMQ|1|A|U|437
5IMQ|1|A|G|438
5IMQ|1|A|A|439
5IMQ|1|A|A|440
5IMQ|1|A|C|442
5IMQ|1|A|C|443
*
5IMQ|1|A|G|491
5IMQ|1|A|G|492
5IMQ|1|A|G|493
5IMQ|1|A|U|494
5IMQ|1|A|A|495
5IMQ|1|A|A|496
5IMQ|1|A|U|497
5IMQ|1|A|A|498
5IMQ|1|A|G|500
*
5IMQ|1|A|C|545
5IMQ|1|A|G|546
5IMQ|1|A|A|547
5IMQ|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S4

Chain P

30S ribosomal protein S12