J5_5IMQ_009

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAC*GGGUCGUGGGG*UACCCGAGUAC*GGAAUCUG*UAAG

Length

40 nucleotides

Bulged bases

5IMQ|1|D|A|270|||A, 5IMQ|1|D|U|270|||Z, 5IMQ|1|D|C|271|||A, 5IMQ|1|D|G|271|||B, 5IMQ|1|D|G|370, 5IMQ|1|D|G|372, 5IMQ|1|D|U|373, 5IMQ|1|D|G|400, 5IMQ|1|D|U|403, 5IMQ|1|D|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|268
5IMQ|1|D|U|269
5IMQ|1|D|A|270
5IMQ|1|D|A|270|||A
5IMQ|1|D|A|270|||B
5IMQ|1|D|C|270|||C
*
5IMQ|1|D|G|270|||W
5IMQ|1|D|G|270|||X
5IMQ|1|D|G|270|||Y
5IMQ|1|D|U|270|||Z
5IMQ|1|D|C|271|||A
5IMQ|1|D|G|271|||B
5IMQ|1|D|U|271|||C
5IMQ|1|D|G|271
5IMQ|1|D|G|272
5IMQ|1|D|G|273
5IMQ|1|D|G|273|||A
*
5IMQ|1|D|U|363|||E
5IMQ|1|D|A|363|||F
5IMQ|1|D|C|364
5IMQ|1|D|C|365
5IMQ|1|D|C|366
5IMQ|1|D|G|370
5IMQ|1|D|A|371
5IMQ|1|D|G|372
5IMQ|1|D|U|373
5IMQ|1|D|A|374
5IMQ|1|D|C|375
*
5IMQ|1|D|G|399
5IMQ|1|D|G|400
5IMQ|1|D|A|401
5IMQ|1|D|A|402
5IMQ|1|D|U|403
5IMQ|1|D|C|404
5IMQ|1|D|U|405
5IMQ|1|D|G|406
*
5IMQ|1|D|U|421
5IMQ|1|D|A|422
5IMQ|1|D|A|423
5IMQ|1|D|G|424

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L31