J5_5IMQ_010

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAGGGUUC*GGUUAG*CU*ACCCGUACCGCAAAC*GUG

Length

35 nucleotides

Bulged bases

5IMQ|1|D|U|1341, 5IMQ|1|D|C|1607, 5IMQ|1|D|A|1609, 5IMQ|1|D|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|1306
5IMQ|1|D|A|1307
5IMQ|1|D|A|1308
5IMQ|1|D|G|1309
5IMQ|1|D|G|1310
5IMQ|1|D|G|1311
5IMQ|1|D|U|1312
5IMQ|1|D|U|1313
5IMQ|1|D|C|1314
*
5IMQ|1|D|G|1338
5IMQ|1|D|G|1339
5IMQ|1|D|U|1340
5IMQ|1|D|U|1341
5IMQ|1|D|A|1342
5IMQ|1|D|G|1343
*
5IMQ|1|D|C|1404
5IMQ|1|D|U|1405
*
5IMQ|1|D|A|1597
5IMQ|1|D|C|1598
5IMQ|1|D|C|1599
5IMQ|1|D|C|1600
5IMQ|1|D|G|1601
5IMQ|1|D|U|1602
5IMQ|1|D|A|1603
5IMQ|1|D|C|1604
5IMQ|1|D|C|1605
5IMQ|1|D|G|1606
5IMQ|1|D|C|1607
5IMQ|1|D|A|1608
5IMQ|1|D|A|1609
5IMQ|1|D|A|1610
5IMQ|1|D|C|1611
*
5IMQ|1|D|G|1620
5IMQ|1|D|U|1621
5IMQ|1|D|G|1622

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain y

50S ribosomal protein L34