J5_5IT9_001

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAC*GUAG

Length

35 nucleotides

Bulged bases

5IT9|1|2|A|540, 5IT9|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|C|31
5IT9|1|2|U|32
5IT9|1|2|U|33
5IT9|1|2|G|34
5IT9|1|2|U|35
*
5IT9|1|2|A|472
5IT9|1|2|A|473
5IT9|1|2|A|474
5IT9|1|2|U|475
5IT9|1|2|A|476
5IT9|1|2|A|477
5IT9|1|2|C|478
*
5IT9|1|2|G|508
5IT9|1|2|G|509
5IT9|1|2|A|510
5IT9|1|2|A|511
5IT9|1|2|U|512
5IT9|1|2|G|513
5IT9|1|2|A|514
5IT9|1|2|G|515
*
5IT9|1|2|C|535
5IT9|1|2|G|536
5IT9|1|2|A|537
5IT9|1|2|G|538
5IT9|1|2|G|539
5IT9|1|2|A|540
5IT9|1|2|A|541
5IT9|1|2|C|542
5IT9|1|2|A|543
5IT9|1|2|A|544
5IT9|1|2|C|545
*
5IT9|1|2|G|591
5IT9|1|2|U|592
5IT9|1|2|A|593
5IT9|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS21

Chain Y

Ribosomal protein eS24

Chain e

Ribosomal protein eS30