J5_5IT9_004

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUGGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5IT9|1|2|U|638, 5IT9|1|2|U|694, 5IT9|1|2|C|696, 5IT9|1|2|C|697, 5IT9|1|2|U|812, 5IT9|1|2|G|814, 5IT9|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|A|635
5IT9|1|2|C|636
5IT9|1|2|U|637
5IT9|1|2|U|638
5IT9|1|2|U|639
5IT9|1|2|G|640
*
5IT9|1|2|U|693
5IT9|1|2|U|694
5IT9|1|2|U|695
5IT9|1|2|C|696
5IT9|1|2|C|697
5IT9|1|2|U|698
*
5IT9|1|2|A|740
5IT9|1|2|C|741
5IT9|1|2|U|742
5IT9|1|2|U|743
5IT9|1|2|U|744
*
5IT9|1|2|A|806
5IT9|1|2|U|807
5IT9|1|2|G|808
5IT9|1|2|G|809
5IT9|1|2|A|810
5IT9|1|2|A|811
5IT9|1|2|U|812
5IT9|1|2|A|813
5IT9|1|2|G|814
5IT9|1|2|G|815
5IT9|1|2|A|816
*
5IT9|1|2|U|853
5IT9|1|2|A|854
5IT9|1|2|A|855
5IT9|1|2|U|856
5IT9|1|2|G|857
5IT9|1|2|A|858
5IT9|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17

Chain N

Ribosomal protein uS15

Chain W

Ribosomal protein uS8