J5_5J02_002
3D structure
- PDB id
- 5J02 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- AGCAGAAG*CGGAAC*GAA*UGUG*CGAU
- Length
- 25 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J02|1|A|A|287
5J02|1|A|G|288
5J02|1|A|C|289
5J02|1|A|A|290
5J02|1|A|G|291
5J02|1|A|A|292
5J02|1|A|A|293
5J02|1|A|G|294
*
5J02|1|A|C|323
5J02|1|A|G|324
5J02|1|A|G|325
5J02|1|A|A|326
5J02|1|A|A|327
5J02|1|A|C|328
*
5J02|1|A|G|354
5J02|1|A|A|355
5J02|1|A|A|356
*
5J02|1|A|U|387
5J02|1|A|G|388
5J02|1|A|U|389
5J02|1|A|G|390
*
5J02|1|A|C|416
5J02|1|A|G|417
5J02|1|A|A|418
5J02|1|A|U|419
Current chains
- Chain A
- GROUP II INTRON LARIAT
Nearby chains
- Chain B
- 5' EXON ANALOG (5'-R(*CP*UP*GP*UP*UP*AP*(5MU))-3')
Coloring options: