3D structure

PDB id
5J02 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.
Experimental method
X-RAY DIFFRACTION
Resolution
3.49 Å

Loop

Sequence
AGCAGAAG*CGGAAC*GAA*UGUG*CGAU
Length
25 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5J02|1|A|A|287
5J02|1|A|G|288
5J02|1|A|C|289
5J02|1|A|A|290
5J02|1|A|G|291
5J02|1|A|A|292
5J02|1|A|A|293
5J02|1|A|G|294
*
5J02|1|A|C|323
5J02|1|A|G|324
5J02|1|A|G|325
5J02|1|A|A|326
5J02|1|A|A|327
5J02|1|A|C|328
*
5J02|1|A|G|354
5J02|1|A|A|355
5J02|1|A|A|356
*
5J02|1|A|U|387
5J02|1|A|G|388
5J02|1|A|U|389
5J02|1|A|G|390
*
5J02|1|A|C|416
5J02|1|A|G|417
5J02|1|A|A|418
5J02|1|A|U|419

Current chains

Chain A
GROUP II INTRON LARIAT

Nearby chains

Chain B
5' EXON ANALOG (5'-R(*CP*UP*GP*UP*UP*AP*(5MU))-3')

Coloring options:

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