J5_5J30_009
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5J30|1|RA|A|2062, 5J30|1|RA|A|2448, 5J30|1|RA|U|2449, 5J30|1|RA|U|2609
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J30|1|RA|A|2057
5J30|1|RA|A|2058
5J30|1|RA|A|2059
5J30|1|RA|A|2060
5J30|1|RA|G|2061
5J30|1|RA|A|2062
5J30|1|RA|C|2063
5J30|1|RA|C|2064
*
5J30|1|RA|G|2446
5J30|1|RA|G|2447
5J30|1|RA|A|2448
5J30|1|RA|U|2449
5J30|1|RA|A|2450
5J30|1|RA|A|2451
5J30|1|RA|C|2452
5J30|1|RA|A|2453
*
5J30|1|RA|U|2500
5J30|1|RA|C|2501
5J30|1|RA|G|2502
5J30|1|RA|2MA|2503
5J30|1|RA|U|2504
5J30|1|RA|G|2505
5J30|1|RA|U|2506
5J30|1|RA|C|2507
*
5J30|1|RA|G|2582
5J30|1|RA|G|2583
5J30|1|RA|U|2584
5J30|1|RA|U|2585
5J30|1|RA|C|2586
5J30|1|RA|A|2587
5J30|1|RA|G|2588
*
5J30|1|RA|C|2606
5J30|1|RA|G|2607
5J30|1|RA|G|2608
5J30|1|RA|U|2609
5J30|1|RA|C|2610
5J30|1|RA|U|2611
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain QY
- Peptide chain release factor 1
- Chain R5
- 50S ribosomal protein L32
- Chain RD
- 50S ribosomal protein L2
- Chain RE
- 50S ribosomal protein L3
- Chain RF
- 50S ribosomal protein L4
- Chain RP
- 50S ribosomal protein L15
- Chain RQ
- 50S ribosomal protein L16
- Chain RW
- 50S ribosomal protein L22
Coloring options: