J5_5J30_014
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5J30|1|YA|U|273|||B, 5J30|1|YA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J30|1|YA|C|268
5J30|1|YA|U|269
5J30|1|YA|A|270
5J30|1|YA|A|271
5J30|1|YA|A|272|||A
5J30|1|YA|C|272|||B
*
5J30|1|YA|G|272|||V
5J30|1|YA|G|272|||W
5J30|1|YA|G|272|||X
5J30|1|YA|U|272|||Y
5J30|1|YA|C|272|||Z
5J30|1|YA|G|273|||A
5J30|1|YA|U|273|||B
5J30|1|YA|G|273|||C
*
5J30|1|YA|C|366
5J30|1|YA|G|370
5J30|1|YA|A|371
5J30|1|YA|G|372
5J30|1|YA|U|373
5J30|1|YA|A|374
5J30|1|YA|C|375
*
5J30|1|YA|G|399
5J30|1|YA|G|400
5J30|1|YA|A|401
5J30|1|YA|A|402
5J30|1|YA|U|403
5J30|1|YA|C|404
5J30|1|YA|U|405
5J30|1|YA|G|406
*
5J30|1|YA|U|421
5J30|1|YA|A|422
5J30|1|YA|A|423
5J30|1|YA|G|424
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YI
- 50S ribosomal protein L9
Coloring options: