J5_5J3C_004

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5J3C|1|RA|U|273|||B, 5J3C|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J3C|1|RA|C|268
5J3C|1|RA|U|269
5J3C|1|RA|A|270
5J3C|1|RA|A|271
5J3C|1|RA|A|272|||A
5J3C|1|RA|C|272|||B
*
5J3C|1|RA|G|272|||V
5J3C|1|RA|G|272|||W
5J3C|1|RA|G|272|||X
5J3C|1|RA|U|272|||Y
5J3C|1|RA|C|272|||Z
5J3C|1|RA|G|273|||A
5J3C|1|RA|U|273|||B
5J3C|1|RA|G|273|||C
*
5J3C|1|RA|C|366
5J3C|1|RA|G|370
5J3C|1|RA|A|371
5J3C|1|RA|G|372
5J3C|1|RA|U|373
5J3C|1|RA|A|374
5J3C|1|RA|C|375
*
5J3C|1|RA|G|399
5J3C|1|RA|G|400
5J3C|1|RA|A|401
5J3C|1|RA|A|402
5J3C|1|RA|U|403
5J3C|1|RA|C|404
5J3C|1|RA|U|405
5J3C|1|RA|G|406
*
5J3C|1|RA|U|421
5J3C|1|RA|A|422
5J3C|1|RA|A|423
5J3C|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9