J5_5J4D_004
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5J4D|1|B|U|271|||D, 5J4D|1|B|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4D|1|B|C|268
5J4D|1|B|U|269
5J4D|1|B|A|270|||A
5J4D|1|B|A|270|||B
5J4D|1|B|A|270|||C
5J4D|1|B|C|270|||D
*
5J4D|1|B|G|270|||X
5J4D|1|B|G|270|||Y
5J4D|1|B|G|270|||Z
5J4D|1|B|U|271|||A
5J4D|1|B|C|271|||B
5J4D|1|B|G|271|||C
5J4D|1|B|U|271|||D
5J4D|1|B|G|271
*
5J4D|1|B|C|366
5J4D|1|B|G|370
5J4D|1|B|A|371
5J4D|1|B|G|372
5J4D|1|B|U|373
5J4D|1|B|A|374
5J4D|1|B|C|375
*
5J4D|1|B|G|399
5J4D|1|B|G|400
5J4D|1|B|A|401
5J4D|1|B|A|402
5J4D|1|B|U|403
5J4D|1|B|C|404
5J4D|1|B|U|405
5J4D|1|B|G|406
*
5J4D|1|B|U|421
5J4D|1|B|A|422
5J4D|1|B|A|423
5J4D|1|B|G|424
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L9
- Chain Y
- 50S ribosomal protein L28
Coloring options: