J5_5J4D_008
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5J4D|1|B|A|2062, 5J4D|1|B|A|2448, 5J4D|1|B|U|2449, 5J4D|1|B|U|2609
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4D|1|B|A|2057
5J4D|1|B|A|2058
5J4D|1|B|A|2059
5J4D|1|B|A|2060
5J4D|1|B|G|2061
5J4D|1|B|A|2062
5J4D|1|B|C|2063
5J4D|1|B|C|2064
*
5J4D|1|B|G|2446
5J4D|1|B|G|2447
5J4D|1|B|A|2448
5J4D|1|B|U|2449
5J4D|1|B|A|2450
5J4D|1|B|A|2451
5J4D|1|B|C|2452
5J4D|1|B|A|2453
*
5J4D|1|B|U|2500
5J4D|1|B|C|2501
5J4D|1|B|G|2502
5J4D|1|B|2MA|2503
5J4D|1|B|U|2504
5J4D|1|B|G|2505
5J4D|1|B|U|2506
5J4D|1|B|C|2507
*
5J4D|1|B|G|2582
5J4D|1|B|G|2583
5J4D|1|B|U|2584
5J4D|1|B|U|2585
5J4D|1|B|C|2586
5J4D|1|B|A|2587
5J4D|1|B|G|2588
*
5J4D|1|B|C|2606
5J4D|1|B|G|2607
5J4D|1|B|G|2608
5J4D|1|B|U|2609
5J4D|1|B|C|2610
5J4D|1|B|U|2611
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L2
- Chain F
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L4
- Chain IA
- Transfer RNA; tRNA
- Chain JA
- Peptide chain release factor 1
- Chain M
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L27
Coloring options: