J5_5J5B_002

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J5B_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0179

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5J5B|1|AA|C|36
5J5B|1|AA|U|37
5J5B|1|AA|G|38
5J5B|1|AA|G|39
*
5J5B|1|AA|C|403
5J5B|1|AA|G|404
5J5B|1|AA|U|405
5J5B|1|AA|G|406
*
5J5B|1|AA|C|436
5J5B|1|AA|U|437
5J5B|1|AA|U|438
5J5B|1|AA|U|439
5J5B|1|AA|C|440
5J5B|1|AA|A|441
5J5B|1|AA|G|442
*
5J5B|1|AA|C|492
5J5B|1|AA|A|493
5J5B|1|AA|G|494
5J5B|1|AA|A|495
5J5B|1|AA|A|496
5J5B|1|AA|G|497
5J5B|1|AA|A|498
5J5B|1|AA|A|499
5J5B|1|AA|G|500
*
5J5B|1|AA|C|545
5J5B|1|AA|A|546
5J5B|1|AA|A|547
5J5B|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12