J5_5J5B_007

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5J5B|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J5B_007 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0513

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5J5B|1|CA|C|47
5J5B|1|CA|G|48
5J5B|1|CA|A|49
5J5B|1|CA|U|50
5J5B|1|CA|G|51
5J5B|1|CA|A|52
5J5B|1|CA|A|53
5J5B|1|CA|G|54
*
5J5B|1|CA|C|116
5J5B|1|CA|G|117
5J5B|1|CA|A|118
5J5B|1|CA|A|119
5J5B|1|CA|U|120
5J5B|1|CA|G|121
*
5J5B|1|CA|C|130
5J5B|1|CA|A|131
*
5J5B|1|CA|U|148
5J5B|1|CA|A|149
5J5B|1|CA|U|150
*
5J5B|1|CA|A|176
5J5B|1|CA|G|177
5J5B|1|CA|G|178

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34