J5_5J7L_004

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J7L_004 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.018

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5J7L|1|BA|C|36
5J7L|1|BA|U|37
5J7L|1|BA|G|38
5J7L|1|BA|G|39
*
5J7L|1|BA|C|403
5J7L|1|BA|G|404
5J7L|1|BA|U|405
5J7L|1|BA|G|406
*
5J7L|1|BA|C|436
5J7L|1|BA|U|437
5J7L|1|BA|U|438
5J7L|1|BA|U|439
5J7L|1|BA|C|440
*
5J7L|1|BA|G|497
5J7L|1|BA|A|498
5J7L|1|BA|A|499
5J7L|1|BA|G|500
*
5J7L|1|BA|C|545
5J7L|1|BA|A|546
5J7L|1|BA|A|547
5J7L|1|BA|G|548

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA