J5_5J7L_006

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

5J7L|1|BA|A|109, 5J7L|1|BA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J7L_006 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0264

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5J7L|1|BA|C|58
5J7L|1|BA|A|59
5J7L|1|BA|A|60
5J7L|1|BA|G|61
*
5J7L|1|BA|C|106
5J7L|1|BA|G|107
5J7L|1|BA|G|108
5J7L|1|BA|A|109
5J7L|1|BA|C|110
5J7L|1|BA|G|111
5J7L|1|BA|G|112
5J7L|1|BA|G|113
*
5J7L|1|BA|C|314
5J7L|1|BA|A|315
5J7L|1|BA|C|316
*
5J7L|1|BA|G|337
5J7L|1|BA|A|338
5J7L|1|BA|C|339
*
5J7L|1|BA|G|350
5J7L|1|BA|G|351
5J7L|1|BA|C|352
5J7L|1|BA|A|353
5J7L|1|BA|G|354

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20

Chain CL

50S ribosomal protein L14

Chain CQ

50S ribosomal protein L19

Chain DH

50S ribosomal protein L9