J5_5J7L_007
3D structure
- PDB id
- 5J7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 5J7L|1|CA|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J7L_007 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0512
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5J7L|1|CA|C|47
5J7L|1|CA|G|48
5J7L|1|CA|A|49
5J7L|1|CA|U|50
5J7L|1|CA|G|51
5J7L|1|CA|A|52
5J7L|1|CA|A|53
5J7L|1|CA|G|54
*
5J7L|1|CA|C|116
5J7L|1|CA|G|117
5J7L|1|CA|A|118
5J7L|1|CA|A|119
5J7L|1|CA|U|120
5J7L|1|CA|G|121
*
5J7L|1|CA|C|130
5J7L|1|CA|A|131
*
5J7L|1|CA|U|148
5J7L|1|CA|A|149
5J7L|1|CA|U|150
*
5J7L|1|CA|A|176
5J7L|1|CA|G|177
5J7L|1|CA|G|178
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C3
- 50S ribosomal protein L34
Coloring options: