J5_5J7L_014

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

5J7L|1|DA|A|532, 5J7L|1|DA|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J7L|1|DA|C|531
5J7L|1|DA|A|532
5J7L|1|DA|G|533
*
5J7L|1|DA|C|560
5J7L|1|DA|G|561
5J7L|1|DA|U|562
5J7L|1|DA|A|563
5J7L|1|DA|C|564
*
5J7L|1|DA|G|577
5J7L|1|DA|G|578
5J7L|1|DA|G|579
*
5J7L|1|DA|C|1261
5J7L|1|DA|A|1262
*
5J7L|1|DA|U|2017
5J7L|1|DA|G|2018

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DE

50S ribosomal protein L4

Chain DR

50S ribosomal protein L20

Chain DS

50S ribosomal protein L21

Chain DT

50S ribosomal protein L22