J5_5J7L_016

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

5J7L|1|DA|U|1758, 5J7L|1|DA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|DA|G|1674
5J7L|1|DA|C|1675
5J7L|1|DA|A|1676
5J7L|1|DA|A|1677
5J7L|1|DA|A|1678
5J7L|1|DA|A|1679
5J7L|1|DA|U|1680
5J7L|1|DA|G|1681
5J7L|1|DA|G|1682
*
5J7L|1|DA|C|1706
5J7L|1|DA|G|1707
*
5J7L|1|DA|U|1751
5J7L|1|DA|C|1752
*
5J7L|1|DA|G|1756
5J7L|1|DA|A|1757
5J7L|1|DA|U|1758
5J7L|1|DA|A|1759
5J7L|1|DA|C|1760
5J7L|1|DA|C|1761
5J7L|1|DA|A|1762
5J7L|1|DA|G|1763
5J7L|1|DA|C|1764
*
5J7L|1|DA|G|1988
5J7L|1|DA|G|1989
5J7L|1|DA|C|1990

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L3

Chain DL

50S ribosomal protein L14

Chain DQ

50S ribosomal protein L19