J5_5J88_002

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J88_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0382

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5J88|1|AA|C|36
5J88|1|AA|U|37
5J88|1|AA|G|38
5J88|1|AA|G|39
*
5J88|1|AA|C|403
5J88|1|AA|G|404
5J88|1|AA|U|405
5J88|1|AA|G|406
*
5J88|1|AA|C|436
5J88|1|AA|U|437
5J88|1|AA|U|438
5J88|1|AA|U|439
5J88|1|AA|C|440
5J88|1|AA|A|441
5J88|1|AA|G|442
*
5J88|1|AA|C|492
5J88|1|AA|A|493
5J88|1|AA|G|494
5J88|1|AA|A|495
5J88|1|AA|A|496
5J88|1|AA|G|497
5J88|1|AA|A|498
5J88|1|AA|A|499
5J88|1|AA|G|500
*
5J88|1|AA|C|545
5J88|1|AA|A|546
5J88|1|AA|A|547
5J88|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12