J5_5J88_007

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5J88|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J88_007 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.069

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5J88|1|CA|C|47
5J88|1|CA|G|48
5J88|1|CA|A|49
5J88|1|CA|U|50
5J88|1|CA|G|51
5J88|1|CA|A|52
5J88|1|CA|A|53
5J88|1|CA|G|54
*
5J88|1|CA|C|116
5J88|1|CA|G|117
5J88|1|CA|A|118
5J88|1|CA|A|119
5J88|1|CA|U|120
5J88|1|CA|G|121
*
5J88|1|CA|C|130
5J88|1|CA|A|131
*
5J88|1|CA|U|148
5J88|1|CA|A|149
5J88|1|CA|U|150
*
5J88|1|CA|A|176
5J88|1|CA|G|177
5J88|1|CA|G|178

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34