J5_5J8A_001

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J8A_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0151

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5J8A|1|AA|C|36
5J8A|1|AA|U|37
5J8A|1|AA|G|38
5J8A|1|AA|G|39
*
5J8A|1|AA|C|403
5J8A|1|AA|G|404
5J8A|1|AA|U|405
5J8A|1|AA|G|406
*
5J8A|1|AA|C|436
5J8A|1|AA|U|437
5J8A|1|AA|U|438
5J8A|1|AA|U|439
5J8A|1|AA|C|440
*
5J8A|1|AA|G|497
5J8A|1|AA|A|498
5J8A|1|AA|A|499
5J8A|1|AA|G|500
*
5J8A|1|AA|C|545
5J8A|1|AA|A|546
5J8A|1|AA|A|547
5J8A|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12