J5_5J91_001

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J91_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0194

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5J91|1|AA|C|36
5J91|1|AA|U|37
5J91|1|AA|G|38
5J91|1|AA|G|39
*
5J91|1|AA|C|403
5J91|1|AA|G|404
5J91|1|AA|U|405
5J91|1|AA|G|406
*
5J91|1|AA|C|436
5J91|1|AA|U|437
5J91|1|AA|U|438
5J91|1|AA|U|439
5J91|1|AA|C|440
*
5J91|1|AA|G|497
5J91|1|AA|A|498
5J91|1|AA|A|499
5J91|1|AA|G|500
*
5J91|1|AA|C|545
5J91|1|AA|A|546
5J91|1|AA|A|547
5J91|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12